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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27474471_27477020_F

Intron Information:

Intron Rank:
127786
Intron Class:
major
Intron Phase:
Intron Coordinates:
27474471 - 27477020
Intron Length:
2550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TAATCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
74.9
36.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.4
0.73
0.9
76.5
37
Minor 5ss
48.6
-0.1
2.8
64.8
41.1
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018887
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026682
27474027 - 27477946
3920