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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27489325_27489522_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
27489325 - 27489522
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTACG
5'SS Class:
strong_major
3'SS Sequence:
CCCGCCATGTTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCGCCAT
U12 Branch Point Sequence:
TCCCCCGCCATG
Flanking Amino Acid:
RDKSRESLEEAAKRQDGGLF
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.5
33.9
Major BPS
45
-0.3
1.4
49.7
44
Major PPT
56.2
0.14
1
54.3
35.2
Minor 5ss
30.6
-2.2
2.5
34.1
41.4
Minor BPS
36.9
-1.1
2.3
40.16
44.4

Associated Gene:

Gene:
TCF7L2
Ensembl Gene ID:
ENSAPLG00000014253
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037887
27488747 - 27665162
176416
ENSAPLT00000017809
27488747 - 27665162
176416
ENSAPLT00000014867
27488747 - 27657894
169148
ENSAPLT00000041167
27488747 - 27665162
176416