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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27489648_27550819_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27489648 - 27550819
Intron Length:
61172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCATCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
GTTTCCTCCATC
Flanking Amino Acid:
NGSLSPTARTYLQMKWPLLD
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.6
37.9
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
77.9
0.63
0.8
70
35.5
Minor 5ss
35.6
-1.6
2.9
44.4
43.5
Minor BPS
56.7
0.19
2
71.43
40

Associated Gene:

Gene:
TCF7L2
Ensembl Gene ID:
ENSAPLG00000014253
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037887
27488747 - 27665162
176416
ENSAPLT00000017809
27488747 - 27665162
176416
ENSAPLT00000014867
27488747 - 27657894
169148
ENSAPLT00000041167
27488747 - 27665162
176416