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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27550922_27637229_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27550922 - 27637229
Intron Length:
86308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TTTCTCTTGACA
Flanking Amino Acid:
ARSPSPAHIVSNKVPVVQHP
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
82.7
0.74
0.9
79.9
32.1
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
77.4
0.86
1.1
83.73
29.3

Associated Gene:

Gene:
TCF7L2
Ensembl Gene ID:
ENSAPLG00000014253
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017809
27488747 - 27665162
176416
ENSAPLT00000014867
27488747 - 27657894
169148
ENSAPLT00000041167
27488747 - 27665162
176416
ENSAPLT00000037887
27488747 - 27665162
176416