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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2759865_2760383_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2759865 - 2760383
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTACA
5'SS Class:
major
3'SS Sequence:
TTTTTTGCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TTTCCTTTAACC
Flanking Amino Acid:
SLKSCGTVVDVINDKIIATN
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
75.4
33.8
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
89.2
0.88
0.7
85
29.8
Minor 5ss
44.5
-0.6
2.5
56.5
41
Minor BPS
84
1.05
1
87.93
27.6

Associated Gene:

Gene:
OIT3
Ensembl Gene ID:
ENSAPLG00000009116
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009491
2754120 - 2776259
22140