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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27639645_27642425_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27639645 - 27642425
Intron Length:
2781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGGAGT
5'SS Class:
major
3'SS Sequence:
TTCTTTTTGCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTCTCTCATTC
Flanking Amino Acid:
IPHPLGWLVPQQGQPVYPIT
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
67.5
43.5
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
84.3
0.77
0.9
80.2
37.3
Minor 5ss
36.2
-1.6
3.3
54.3
43.8
Minor BPS
51.6
0.03
1.8
67.67
38.2

Associated Gene:

Gene:
TCF7L2
Ensembl Gene ID:
ENSAPLG00000014253
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041167
27488747 - 27665162
176416
ENSAPLT00000037887
27488747 - 27665162
176416
ENSAPLT00000017809
27488747 - 27665162
176416
ENSAPLT00000014867
27488747 - 27657894
169148