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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27642513_27648842_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27642513 - 27648842
Intron Length:
6330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTCTGACGA
Flanking Amino Acid:
TALTVNASMSRFPPHMVPPH
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.1
0.7
0.7
74.1
31.1
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
48.3
-0.1
2
64.44
42

Associated Gene:

Gene:
TCF7L2
Ensembl Gene ID:
ENSAPLG00000014253
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041167
27488747 - 27665162
176416
ENSAPLT00000037887
27488747 - 27665162
176416
ENSAPLT00000017809
27488747 - 27665162
176416
ENSAPLT00000014867
27488747 - 27657894
169148