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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27655999_27662913_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27655999 - 27662913
Intron Length:
6915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTAACG
5'SS Class:
major
3'SS Sequence:
TCCCTGTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
CTGCCCTTCACT
Flanking Amino Acid:
NPCLSLPPITGEKKKCVRYI
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.1
58.1
40.7
Major BPS
64.9
0.37
1
67
29.8
Major PPT
76.2
0.59
0.8
68.4
37.4
Minor 5ss
27.3
-2.6
2.9
32.7
41.7
Minor BPS
63
0.49
1.8
77.11
45.3

Associated Gene:

Gene:
TCF7L2
Ensembl Gene ID:
ENSAPLG00000014253
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041167
27488747 - 27665162
176416