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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27657229_27657821_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27657229 - 27657821
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTATGCTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
TTGTGTTTACCT
Flanking Amino Acid:
DQQNNWCGPCRCKYSKEVSG
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
84.9
26.3
Major BPS
70
0.5
1
59.6
38.6
Major PPT
71.5
0.48
1
65.8
39.7
Minor 5ss
40
-1.1
2.7
50.4
46.1
Minor BPS
57.3
0.31
2.1
79.01
43.8

Associated Gene:

Gene:
TCF7L2
Ensembl Gene ID:
ENSAPLG00000014253
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017809
27488747 - 27665162
176416
ENSAPLT00000014867
27488747 - 27657894
169148