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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2768651_2771626_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2768651 - 2771626
Intron Length:
2976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
ACGTTCTGACAG
Flanking Amino Acid:
TLGPDGQTCLDENECEQGNG
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.1
34.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
88.4
0.86
0.7
84.2
30.7
Minor 5ss
27.1
-2.6
2.9
24.2
36.8
Minor BPS
43.3
-0.6
1.8
43.09
42.3

Associated Gene:

Gene:
OIT3
Ensembl Gene ID:
ENSAPLG00000009116
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009491
2754120 - 2776259
22140