Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27691044_27694300_F

Intron Information:

Intron Rank:

125139

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

27691044 - 27694300

Intron Length:

3257

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCCAAA

5'SS Class:

major

3'SS Sequence:

TGTTCCCAAAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ACCTCAT

U12 Branch Point Sequence:

TTTACCTCATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.8

0.42

1.2

65.2

42.4

Major BPS

73.5

0.58

73.6

32.5

Major PPT

56.8

0.15

1.1

58.1

36.7

Minor 5ss

43.2

-0.7

57.3

Minor BPS

63.4

0.5

1.9

85.47

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017395

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037133

27690700 - 27694517

3818