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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27694452_27744565_F

Intron Information:

Intron Rank:
125140
Intron Class:
major
Intron Phase:
Intron Coordinates:
27694452 - 27744565
Intron Length:
50114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTGTTTTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
100
1.24
0.5
100
0
Major PPT
89.8
0.9
0.6
88
21.8
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
47.2
-0.1
1.7
62.66
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017395
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044109
27693410 - 27745090
51681