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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27773490_27781946_F

Intron Information:

Intron Rank:
126509
Intron Class:
major
Intron Phase:
Intron Coordinates:
27773490 - 27781946
Intron Length:
8457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTTC
5'SS Class:
major
3'SS Sequence:
GTGTTAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTTTTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
68.4
37.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
71
0.47
1
67.8
42.5
Minor 5ss
47.4
-0.2
3
67.5
43.9
Minor BPS
65.3
0.48
1.6
75.28
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018171
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018160
27773214 - 27783864
10651