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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27777292_27777580_R

Intron Information:

Intron Rank:
139292
Intron Class:
major
Intron Phase:
Intron Coordinates:
27777292 - 27777580
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTACTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTCTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
82.2
0.72
0.7
77.7
29.6
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
78.4
0.97
1.2
92.49
29.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022411
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044304
27776190 - 27777859
1670