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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27783270_27783373_F

Intron Information:

Intron Rank:
126512
Intron Class:
major
Intron Phase:
Intron Coordinates:
27783270 - 27783373
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGCTTA
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
GGTACCTTCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
77
34.4
Major BPS
75
0.62
1.1
77.2
36
Major PPT
92.1
0.95
0.5
92.3
18.1
Minor 5ss
49.9
-0
2.8
69
41.9
Minor BPS
51.8
-0
1.9
57.78
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018171
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018160
27773214 - 27783864
10651