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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2784581_2786243_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2784581 - 2786243
Intron Length:
1663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTATTCTGACCT
Flanking Amino Acid:
MYAYFVMTRQEYVYPDARDR
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
84.6
33.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
97
1.06
0.5
96.7
11.4
Minor 5ss
38
-1.4
3.4
57.1
47.2
Minor BPS
61.8
0.45
1.7
81.41
40

Associated Gene:

Gene:
MCU
Ensembl Gene ID:
ENSAPLG00000009087
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009459
2782243 - 2852136
69894