About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2786448_2786898_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2786448 - 2786898
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGAAGC
5'SS Class:
major
3'SS Sequence:
CTGTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAA
U12 Branch Point Sequence:
TTTTCTGAGAAT
Flanking Amino Acid:
LKEQLAPLEKVRLELSRKAE
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
68.7
36.3
Major BPS
57
0.17
0.9
65
30.8
Major PPT
88.3
0.86
0.7
84
31
Minor 5ss
30.1
-2.3
2.9
35.2
34.6
Minor BPS
46.7
-0.1
2.4
75.57
41.7

Associated Gene:

Gene:
MCU
Ensembl Gene ID:
ENSAPLG00000009087
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009459
2782243 - 2852136
69894