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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27887481_27894513_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27887481 - 27894513
Intron Length:
7033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTATCCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCAGAAACT
Flanking Amino Acid:
ILLLGNTHLCTSWFLLANLL
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.3
68.8
43.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
80.5
0.69
0.8
74.5
30.4
Minor 5ss
34.8
-1.7
2.8
37.9
40
Minor BPS
51.6
0.13
2.5
84.99
41.5

Associated Gene:

Gene:
HABP2
Ensembl Gene ID:
ENSAPLG00000013955
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037765
27887244 - 27908465
21222
ENSAPLT00000014575
27887244 - 27907074
19831