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Intron Name: Anas_platyrhynchos_platyrhynchos_6_27894548_27898384_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27894548 - 27898384

Intron Length:

3837

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

CTCCTCCCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTAAC

U12 Branch Point Sequence:

AACTCCTCCATG

Flanking Amino Acid:

SWFLLANLLNDEAADDYEYY

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

74.2

36.5

Major BPS

62.2

0.3

1.2

38.7

Major PPT

74.6

0.55

0.7

68.3

25.5

Minor 5ss

32.2

-2

3.1

37.6

42.2

Minor BPS

46.6

-0.4

51.03

43.5

Associated Gene:

Gene:

HABP2

Ensembl Gene ID:

ENSAPLG00000013955

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037765

27887244 - 27908465

21222

ENSAPLT00000014575

27887244 - 27907074

19831