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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27901445_27901868_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27901445 - 27901868
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
ATTTCCCCACTC
Flanking Amino Acid:
SYGIGEHNFCRNPDEDEKPW
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
80.8
0.69
0.8
77.8
31
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
47.7
-0.1
2.1
65.88
39.8

Associated Gene:

Gene:
HABP2
Ensembl Gene ID:
ENSAPLG00000013955
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014575
27887244 - 27907074
19831
ENSAPLT00000037765
27887244 - 27908465
21222