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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27906552_27907465_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
27906552 - 27907465
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAAAT
5'SS Class:
major
3'SS Sequence:
TCTTGACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
CTTCTCTTGACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
75.3
33.9
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
80.6
0.69
0.9
73.8
35.8
Minor 5ss
41.3
-1
2.9
57.7
46.5
Minor BPS
73.4
0.82
1.2
84.21
36.5

Associated Gene:

Gene:
HABP2
Ensembl Gene ID:
ENSAPLG00000013955
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037765
27887244 - 27908465
21222