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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2790691_2794652_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2790691 - 2794652
Intron Length:
3962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTCATCT
Flanking Amino Acid:
VYCSTVVPSDEVTVVYQNGL
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.6
30.3
Major BPS
100
1.24
0.5
100
0
Major PPT
93
0.97
0.5
93
16.2
Minor 5ss
27.7
-2.6
3
31.2
36.9
Minor BPS
54.3
0.21
1.8
75.24
42.1

Associated Gene:

Gene:
MCU
Ensembl Gene ID:
ENSAPLG00000009087
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009459
2782243 - 2852136
69894