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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27910210_27911478_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27910210 - 27911478
Intron Length:
1269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCAACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCTTCTCAACA
Flanking Amino Acid:
ARQNALHISDKVYKTSWEQT
Intron Amino Acid Position:
1374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
89.1
24.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
71.4
0.48
0.9
65.8
33.6
Minor 5ss
39.8
-1.1
2.9
56
41.5
Minor BPS
71.3
0.66
1.5
79.1
37.4

Associated Gene:

Gene:
NRAP
Ensembl Gene ID:
ENSAPLG00000013492
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047647
27904606 - 27951149
46544
ENSAPLT00000014153
27906555 - 27951149
44595