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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27925290_27927439_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27925290 - 27927439
Intron Length:
2150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTCTGCTCAACA
Flanking Amino Acid:
AKKAGELISEKKYRQHPYAL
Intron Amino Acid Position:
820

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
84
0.85
0.9
75
39.9
Major PPT
74.5
0.55
0.9
69.8
35.4
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
61.2
0.35
2
75.44
42.2

Associated Gene:

Gene:
NRAP
Ensembl Gene ID:
ENSAPLG00000013492
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047647
27904606 - 27951149
46544
ENSAPLT00000014153
27906555 - 27951149
44595