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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27929052_27929693_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27929052 - 27929693
Intron Length:
642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTCTTTTTCACA
Flanking Amino Acid:
AKAKRDLASDIKYKEDYEKM
Intron Amino Acid Position:
681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.9
34.9
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
90.3
0.91
0.6
86.8
24.1
Minor 5ss
36.3
-1.5
2.9
47
41.7
Minor BPS
62.5
0.39
1.7
73.92
38.7

Associated Gene:

Gene:
NRAP
Ensembl Gene ID:
ENSAPLG00000013492
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047647
27904606 - 27951149
46544
ENSAPLT00000014153
27906555 - 27951149
44595