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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27934051_27934257_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27934051 - 27934257
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTCCCTCAACA
Flanking Amino Acid:
AKKAYGLQSDLQYRSDLMWM
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
78.2
0.63
0.8
74
29.6
Minor 5ss
42
-0.9
2.8
53.8
43.7
Minor BPS
76.3
0.82
1.5
85.78
32.8

Associated Gene:

Gene:
NRAP
Ensembl Gene ID:
ENSAPLG00000013492
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047647
27904606 - 27951149
46544
ENSAPLT00000014153
27906555 - 27951149
44595