Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27938250_27940129_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27938250 - 27940129

Intron Length:

1880

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAATAAT

5'SS Class:

major

3'SS Sequence:

TATTTTAATTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTATTTTAATT

Flanking Amino Acid:

TTRKLVPLKDVNYRQSIDKL

Intron Amino Acid Position:

358

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

82.4

29.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

76.6

0.6

0.9

75.7

Minor 5ss

39.2

-1.2

55.3

42.3

Minor BPS

76.1

0.9

1.1

87.86

31.1

Associated Gene:

Gene:

NRAP

Ensembl Gene ID:

ENSAPLG00000013492

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014153

27906555 - 27951149

44595

ENSAPLT00000047647

27904606 - 27951149

46544