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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2794723_2851977_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2794723 - 2851977
Intron Length:
57255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TTGTATTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGTAT
U12 Branch Point Sequence:
TGTGCTTGTATT
Flanking Amino Acid:
RRRQQQRHRTVHQRLSPWQS
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
59.2
0.23
1.4
61.1
45.5
Major PPT
80.9
0.69
0.9
73.8
41.4
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
48.3
-0
1.9
68.97
42.6

Associated Gene:

Gene:
MCU
Ensembl Gene ID:
ENSAPLG00000009087
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009459
2782243 - 2852136
69894