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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27949492_27950287_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27949492 - 27950287
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTGTTTGTAATA
Flanking Amino Acid:
AKRATQLSSNVEYKRGHEER
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
27
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
84.9
0.78
0.7
77.7
31
Minor 5ss
41.1
-1
3.4
62.8
42
Minor BPS
55.7
0.17
2
69.78
37.7

Associated Gene:

Gene:
NRAP
Ensembl Gene ID:
ENSAPLG00000013492
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047647
27904606 - 27951149
46544
ENSAPLT00000014153
27906555 - 27951149
44595