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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27962981_27963386_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
27962981 - 27963386
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACTG
5'SS Class:
strong_major
3'SS Sequence:
CTTATGTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTGTACTTATGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
71.5
40.2
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
78.3
0.64
0.9
73
37.2
Minor 5ss
30.1
-2.3
3.1
38.3
46.6
Minor BPS
53.6
0.19
2.1
76.7
45.6

Associated Gene:

Gene:
CASP7
Ensembl Gene ID:
ENSAPLG00000013412
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013972
27962581 - 27983845
21265