Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27980371_27981308_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27980371 - 27981308

Intron Length:

938

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGTTC

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTCTGACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAATCAA

U12 Branch Point Sequence:

TCTTTTCTGACA

Flanking Amino Acid:

INNKNFEDKTGMGTRNGTDK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.73

75.8

34.6

Major BPS

58.9

0.22

1.1

61.7

34.2

Major PPT

82.6

0.73

0.9

79.9

32.3

Minor 5ss

41.4

-1

3.3

58.9

45.9

Minor BPS

57.4

0.23

1.6

70.06

36.4

Associated Gene:

Gene:

CASP7

Ensembl Gene ID:

ENSAPLG00000013412

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013972

27962581 - 27983845

21265