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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27981438_27981868_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27981438 - 27981868
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGACTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TTTTGGTTAAAA
Flanking Amino Acid:
CDDMKKLLKQAAEENHSDAA
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
74.2
0.54
0.9
67.5
38.6
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
53
0.09
2.5
76.43
40.8

Associated Gene:

Gene:
CASP7
Ensembl Gene ID:
ENSAPLG00000013412
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013972
27962581 - 27983845
21265