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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27988945_27990105_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27988945 - 27990105
Intron Length:
1161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAAAT
5'SS Class:
major
3'SS Sequence:
TCTCTTTGATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTAAT
U12 Branch Point Sequence:
TTCTCTTTGATT
Flanking Amino Acid:
MASGSKKNSAVGAQKTFCSE
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
71.8
39.8
Major BPS
58.9
0.22
1.4
61.7
43.1
Major PPT
72.2
0.5
0.9
73.9
35.4
Minor 5ss
39.6
-1.2
3.2
57.7
46.5
Minor BPS
76.7
0.92
1.1
86.38
34

Associated Gene:

Gene:
PLEKHS1
Ensembl Gene ID:
ENSAPLG00000013393
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013941
27988877 - 28003809
14933