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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27990198_27990302_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27990198 - 27990302
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACAAA
5'SS Class:
major
3'SS Sequence:
TTCTCTTCGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGAGTTTTAATG
Flanking Amino Acid:
SPPLQLLNSQKSWKRRFFIL
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
69.2
37
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.9
0.65
0.9
76.8
31.9
Minor 5ss
44.1
-0.6
2.7
56.7
47.6
Minor BPS
55.7
0.04
1.4
55.88
40.3

Associated Gene:

Gene:
PLEKHS1
Ensembl Gene ID:
ENSAPLG00000013393
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013941
27988877 - 28003809
14933