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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27990410_27991787_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27990410 - 27991787
Intron Length:
1378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATGTAAC
5'SS Class:
major
3'SS Sequence:
ATTATCTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATTAT
U12 Branch Point Sequence:
GTATCATTATCT
Flanking Amino Acid:
QSVKGSIPVDEIVKVEIGIS
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
67.8
37.5
Major BPS
72.1
0.55
1.1
62.3
43.7
Major PPT
71.9
0.49
1
66
39.3
Minor 5ss
43.4
-0.7
2.5
50.3
40.4
Minor BPS
60.6
0.41
1.9
79.39
41.9

Associated Gene:

Gene:
PLEKHS1
Ensembl Gene ID:
ENSAPLG00000013393
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013941
27988877 - 28003809
14933