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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27991923_27993114_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27991923 - 27993114
Intron Length:
1192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCAGA
5'SS Class:
major
3'SS Sequence:
TTCCAACCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTGTTCCAACCT
Flanking Amino Acid:
NRCYYLIGKSSLEIEDWVTA
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
43.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
73.8
0.54
0.9
65.9
34.6
Minor 5ss
37.4
-1.4
3.1
48.6
47.2
Minor BPS
46.6
-0.1
2.2
71.62
45.5

Associated Gene:

Gene:
PLEKHS1
Ensembl Gene ID:
ENSAPLG00000013393
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013941
27988877 - 28003809
14933