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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27993188_27993864_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27993188 - 27993864
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACGTTT
5'SS Class:
major
3'SS Sequence:
ATCTTATTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
GTTATCTTATTT
Flanking Amino Acid:
KAKIDGHCPQNQNLANPEVK
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
75.6
36.7
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
79.1
0.66
0.8
74.2
34.9
Minor 5ss
42.8
-0.8
3.4
64.1
47.4
Minor BPS
61.2
0.43
1.6
77.02
39.7

Associated Gene:

Gene:
PLEKHS1
Ensembl Gene ID:
ENSAPLG00000013393
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013941
27988877 - 28003809
14933