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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27993973_27994701_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27993973 - 27994701
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTTTTGAATG
Flanking Amino Acid:
SSLERQSYLETDDPSEDKNR
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.8
35.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
76.1
0.59
1
70.5
39
Minor 5ss
31.4
-2.1
3.2
40.8
45.4
Minor BPS
59.3
0.15
1.5
63.05
39.8

Associated Gene:

Gene:
PLEKHS1
Ensembl Gene ID:
ENSAPLG00000013393
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013941
27988877 - 28003809
14933