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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27994798_27998289_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27994798 - 27998289
Intron Length:
3492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCAGA
5'SS Class:
major
3'SS Sequence:
ATACTTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATACTTTTAACA
Flanking Amino Acid:
DSLRGDFPNLGKTLRKSDEN
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
66.8
40.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
74.3
0.55
1
69.9
39.5
Minor 5ss
33.4
-1.9
2.8
36.7
42.5
Minor BPS
68.4
0.58
1.2
71.76
33.6

Associated Gene:

Gene:
PLEKHS1
Ensembl Gene ID:
ENSAPLG00000013393
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013941
27988877 - 28003809
14933