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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_27999492_28000775_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27999492 - 28000775
Intron Length:
1284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
CATTCTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATCATCA
Flanking Amino Acid:
KENVYVSMESLRLLDKSCQL
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
74.7
35.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.7
0.76
0.8
81.1
30.5
Minor 5ss
38.9
-1.2
2.8
55.7
41.6
Minor BPS
50.5
0.01
2
72.58
39.2

Associated Gene:

Gene:
PLEKHS1
Ensembl Gene ID:
ENSAPLG00000013393
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013941
27988877 - 28003809
14933