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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28000986_28001076_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28000986 - 28001076
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTGAT
U12 Branch Point Sequence:
TTTTCTCTCACA
Flanking Amino Acid:
LSVVQLSVLLSQVTDETQLQ
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
34.4
Major BPS
71.5
0.53
1.1
63
43.2
Major PPT
88.5
0.87
0.6
84
24.1
Minor 5ss
40.9
-1
3.4
58.3
46.6
Minor BPS
60.1
0.31
2.1
79.78
36.5

Associated Gene:

Gene:
PLEKHS1
Ensembl Gene ID:
ENSAPLG00000013393
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013941
27988877 - 28003809
14933