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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28001179_28002844_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
28001179 - 28002844
Intron Length:
1666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CCAAATACCCTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TCTCCTCCAAAT
Flanking Amino Acid:
LQLTEAVGQICVSQWTGPCH
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
53.9
0.09
0.9
43.8
36.8
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
46.8
-0.1
1.9
67.9
42.5

Associated Gene:

Gene:
PLEKHS1
Ensembl Gene ID:
ENSAPLG00000013393
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013941
27988877 - 28003809
14933