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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28016323_28016585_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
28016323 - 28016585
Intron Length:
263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCTGA
5'SS Class:
major
3'SS Sequence:
TTCTGTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGAAATTAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
65.9
42.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.1
0.72
0.8
80.5
31.5
Minor 5ss
41.8
-0.9
3.2
55.7
48.5
Minor BPS
55.3
0.24
1.8
75.17
41.3

Associated Gene:

Gene:
DCLRE1A
Ensembl Gene ID:
ENSAPLG00000013365
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013927
28016209 - 28033086
16878