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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28017580_28021291_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28017580 - 28021291
Intron Length:
3712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
ATTCTTTTAACA
Flanking Amino Acid:
ILPMMQITFKGLQDHLNKFS
Intron Amino Acid Position:
900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
81.1
0.7
0.9
77.4
35
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
74.3
0.76
1.1
78.75
30.7

Associated Gene:

Gene:
DCLRE1A
Ensembl Gene ID:
ENSAPLG00000013365
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013927
28016209 - 28033086
16878