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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28020917_28021291_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28020917 - 28021291
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTGATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
CTGTCTTTTACT
Flanking Amino Acid:
ILPMMQITFKEKTRRIFWLR
Intron Amino Acid Position:
900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
67.3
0.39
1
61.9
43.7
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
66.6
0.6
1.7
79.44
43

Associated Gene:

Gene:
DCLRE1A
Ensembl Gene ID:
ENSAPLG00000013365
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023979
28019980 - 28033086
13107