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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28033270_28035256_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28033270 - 28035256
Intron Length:
1987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGAATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
GCTCTCTGAATT
Flanking Amino Acid:
RDLTVPELGGDLQWLNTEGP
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.5
38.7
Major BPS
69.8
0.49
1
61
37.5
Major PPT
73.6
0.53
0.9
66.2
38.5
Minor 5ss
25.2
-2.8
3.2
31.3
42.9
Minor BPS
58.7
0.35
1.4
70.72
40.3

Associated Gene:

Gene:
NHLRC2
Ensembl Gene ID:
ENSAPLG00000013273
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013839
28033107 - 28063091
29985