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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28035410_28042367_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28035410 - 28042367
Intron Length:
6958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TATGTTTCAATG
Flanking Amino Acid:
HELEQQYSDKDGLVIIGVHS
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
68.4
36.7
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
29.1
-2.4
3.4
37.5
47.2
Minor BPS
49.5
-0.1
1.6
55.75
40.5

Associated Gene:

Gene:
NHLRC2
Ensembl Gene ID:
ENSAPLG00000013273
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013839
28033107 - 28063091
29985