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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28042824_28044409_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28042824 - 28044409
Intron Length:
1586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCATTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTCTGAAAT
Flanking Amino Acid:
KNGQILHTIGGPNSGRKDGR
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
79.4
0.66
0.8
73.5
36.1
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
73
0.8
1.5
90.14
33.1

Associated Gene:

Gene:
NHLRC2
Ensembl Gene ID:
ENSAPLG00000013273
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013839
28033107 - 28063091
29985