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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28056150_28056606_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28056150 - 28056606
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTCTTGAATA
Flanking Amino Acid:
MLEGGKLPKGSDLKKGTCLR
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
79.6
0.67
0.8
78.9
34.4
Minor 5ss
38.1
-1.3
3.4
55.9
48.3
Minor BPS
70.3
0.63
1.3
77
33.7

Associated Gene:

Gene:
NHLRC2
Ensembl Gene ID:
ENSAPLG00000013273
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013839
28033107 - 28063091
29985