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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_28058475_28059739_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28058475 - 28059739
Intron Length:
1265

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTACTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGAAAATTAATA
Flanking Amino Acid:
LDLETKILSMLPILNPEMCD
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
83.2
35.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73
0.52
0.9
69.9
35.6
Minor 5ss
27.2
-2.6
3.8
39.2
40.5
Minor BPS
49
-0
1.8
60.67
38.5

Associated Gene:

Gene:
NHLRC2
Ensembl Gene ID:
ENSAPLG00000013273
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013839
28033107 - 28063091
29985